Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015818602.1_cds_XP_016499717.1_13613
CDS Infomation

[gene=LOC107818250] [db_xref=GeneID:107818250] [protein=pentatricopeptide repeat-containing protein At5g24830-like] [protein_id=XP_016499717.1] [location=join(162920..162928,163006..163151,163240..163398,163697..165122)] [gbkey=CDS]
Sequence

ATGCAGCCCCTATTAATTGTCTCGGAGGAATCTCAATTTCTTCTTCGAATACTGAACGGG
AGTTTTCAAACGCTAGACTTCATCAAAGACCGCGTTTTTCACGGTTTTGCCGATTTATTC
TGCTCGAAAGCGGATTTGGATGTTATCGACATTAGACAAGATAATGTAGTGCAATGTGTG
AATCGGGAGGAGCAAGGATCCAAAGATTCGTTGTCTAAGGGGAACGATTCGGATCAGCAA
GAGGATTCAAGAGTGGGATTCAACGTGTTGGATGCGATGTTAAAGCATAGTCTGGATCGT
CTGAAGAGTATGAGGGAAAGAATATCCTCAGCTGAAGCAGGCATTCATAACTGCACCTTG
GAAATAAATTTCAATAAAGATGCATATGTTATTAGAGCTATGTGTCTGGATGGTAAAATG
GGGGCAGCTTTATCTCTTTGGTTCAACATGATACAGAATAGTATTGTTCCTGATGTTATC
ACACACAATTACCTCATCAATGGACTGTGCAAAAACTGTGAATTGGAGAAGGCAGAGTGG
ATTGTTAGAGGTATGTTATATAGGGGCCCTTCTCCCACTTGTGCTACGTACAACTCCTTA
ATAAGGGGTTATTGCCTCATGAATGACGTCGATAAAGCTCTAAACACGTTTTCTACCATG
GCCAACCATGGGATTTTACCAAACAGAGTTACTTGTAACATCCTTGTTCATGCGCTTTGT
AAGAAGGGTTTGTTGGAGGAGGCGAAAAAGCTTTTTCATAAATTACTAAGCAAAAATCAT
AACGGGGGGAGCTCAGATTTGATTACATCAACCATAATGATGGATGGTTGCTTTAAAAAT
GGAGATACTGATCAAGCTCTTGCTTTTTGGGAGAGGATGTTAAAAGAGGGTGTCCAAGTT
GATAAAGTTTCTTACAATGTTGTTGTCCATGGATTCTGTTTGAGCCATGACGTGGGCATT
GCATATAAGTATTGTTGTGAAATGCTAAAGCTTGGGTTCGTTCCAGATGTCTATTCTTAC
AACACTCTTGTTGGAGCACTTTGTAAAAAAGGAAAGACCAGTGATGCTTGTTATATCTAC
GATGTTATGACAAGAATGGGTGTCATCCCAGATCAAATTACATACAAAATGATAATTCAG
GGCCTATGTATTAACAGGGAAATTGATAGAGCCAATTGTTTTCTTGATTACATGTTAGAG
AATTCCATTATACCTGAACCACTTGTTTGGAATGTTATAATCGATGGTTACGGAAAATTT
GGAGATATACAAAAGGCTTCATACATTAGAGACAAAATGGTAGCATTTGGTGTTCTACCA
AACATATATACATATAATGCATTAATTTATGCACAGATAAAGTCAGGAAATATTTTAGCA
GCTCAGCCCTTGGAGAAGGAGATGCTTTTATATGGTCTTACCCCTGATTTAGTTACTTAC
AATCTGTTGATTGGTGCTGCTTGCAGTCTTGGCCTGATTCACTCAGCACTTCAGCTACAT
GACGAAATGTTGAGAAAAGGTTGTCAGCCAGATGTAATTACCTACAGCGAACTACTTAAG
GTGTTTTGTCTACAAGGTATGATGAAAGAAGCGGACAAGCTCTTTGGGAAGTTACTGGCA
TCTGGTTTAGCTGTTGATCATGTTCCCTTTCTAATACTCATGAAAAGATACTGCAGACTG
AGAGAATTTGATAAAGTCTTTGACCTTTACCAAAAGTGGTTAGTGACTATGCGTAGATGA

Peptide Sequence

PEP ID

XP_016499717.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g24830-like [Nicotiana tabacum]
Sequence

MQPLLIVSEESQFLLRILNGSFQTLDFIKDRVFHGFADLFCSKADLDVIDIRQDNVVQCV
NREEQGSKDSLSKGNDSDQQEDSRVGFNVLDAMLKHSLDRLKSMRERISSAEAGIHNCTL
EINFNKDAYVIRAMCLDGKMGAALSLWFNMIQNSIVPDVITHNYLINGLCKNCELEKAEW
IVRGMLYRGPSPTCATYNSLIRGYCLMNDVDKALNTFSTMANHGILPNRVTCNILVHALC
KKGLLEEAKKLFHKLLSKNHNGGSSDLITSTIMMDGCFKNGDTDQALAFWERMLKEGVQV
DKVSYNVVVHGFCLSHDVGIAYKYCCEMLKLGFVPDVYSYNTLVGALCKKGKTSDACYIY
DVMTRMGVIPDQITYKMIIQGLCINREIDRANCFLDYMLENSIIPEPLVWNVIIDGYGKF
GDIQKASYIRDKMVAFGVLPNIYTYNALIYAQIKSGNILAAQPLEKEMLLYGLTPDLVTY
NLLIGAACSLGLIHSALQLHDEMLRKGCQPDVITYSELLKVFCLQGMMKEADKLFGKLLA
SGLAVDHVPFLILMKRYCRLREFDKVFDLYQKWLVTMRR

Transcript Sequence

Gene sequence data has not been registered.